Woody plants serve as crucial ecological barriers surrounding oases in arid and semi-arid regions, playing a vital role in maintaining the stability and supporting sustainable development of oases. However, their sparse distribution makes significant challenges in accurately mapping their spatial extent using medium-resolution remote sensing imagery. In this study, we utilized high-resolution Gaofen (GF-2) and Landsat 5/7/8 satellite images to quantify the relationship between vegetation growth and groundwater table depths (GTD) in a typical inland river basin from 1988 to 2021. Our findings are as follows: (1) Based on the D-LinkNet model, the distribution of woody plants was accurately extracted with an overall accuracy (OA) of 96.06%. (2) Approximately 95.33% of the desert areas had fractional woody plant coverage (FWC) values of less than 10%. (3) The difference between fractional woody plant coverage and fractional vegetation cover proved to be a fine indicator for delineating the range of desert-oasis ecotone. (4) The optimal GTD for Haloxylon ammodendron and Tamarix ramosissima was determined to be 5.51 m and 3.36 m, respectively. Understanding the relationship between woody plant growth and GTD is essential for effective ecological conservation and water resource management in arid and semi-arid regions.