The Janah alluvial aquifer is located in southern Iran with an arid climate. The type of groundwater in this aquifer is dominantly of sodium chloride and total dissolved solid of groundwater samples range from 1.63 to 335 g/L which confirms that groundwater quality has been severely degraded by salinization. Hydrogeochemical and isotopic investigations were conducted to identify the source of salinity. Total dissolved solids and major ion concentrations were measured at 51 selected sampling sites including springs, wells and surface waters. In addition stable isotopic composition (oxygen-18 and deuterium) was measured in 6 sampling points. The study indicates that the sources of salinity of the Janah aquifer include dissolution of salt diapir and evaporite rocks, a geothermal spring and intrusion of the river water which function individually or together in different parts of the aquifer. Based on the hydrogeochemical and geological studies conceptual flow models were prepared for different parts of the aquifer which illustrate how each source of salinity deteriorates the quality of the alluvial aquifer. We proposed few remediation methods including construction of cemented channel and sealed basins to improve groundwater quality. These methods would prevent infiltration of low quality water into the alluvial aquifer. (C) 2014 Elsevier GmbH. All rights reserved.