Soil total carbon (TC) and total nitrogen (TN) are key indicators of soil fertility and ecosystem stability, particularly in dryland agroecosystems. However, how rotational tillage combined with straw return affects aggregate formation and aggregate-associated TC and TN stabilization remains insufficiently understood. In this study, we aimed to clarify how rotational tillage affects aggregate structure, stability, and the spatial distribution of TC and TN, thereby revealing internal processes driving nutrient stabilization in dryland farming systems. A long-term field experiment was conducted at the Shenfeng site of Shanxi Agricultural University, China, including three rotational tillage systems with straw return: T1 (two years of no tillage (NT) + one year of deep tillage (DT)), T2 (two years of conventional tillage (CT) + one year of DT), and T3 (two years of DT + one year of CT). Soil aggregates were separated into total mechanical aggregate (TMA), 0.25-2 mm MA, and 2-10 mm MA, and they were further fractionated into water-stable aggregates (WM, Wm, and Wf) for TC and TN analysis. The results showed that aggregate stability, TC, and TN were positively correlated and decreased with soil depth, indicating strong surface enrichment. TC was mainly enriched in 0.25-2 mm MA, whereas TN was concentrated in 2-10 mm MA, and water-stable macroaggregates (WM) acted as the dominant reservoirs for RC and RN. Relative to the 2016 baseline (CK), TC in 2022 tended to be higher under rotational tillage with straw return, while NT-containing systems better maintained TN across the 0-60 cm profile. Among the treatments, T1 provided the most balanced performance, with a higher MWD and GMD, lower D, and improved aggregate-associated TC and TN retention. These findings suggest that rotational tillage with straw return, particularly the NT-NT-DT sequence, can support aggregate stability and is associated with improved aggregate-mediated TC and TN retention in the Loess Plateau dryland winter wheat system.