Rational allocation and coordinated operation of water resources in arid inland river basins are crucial for sustaining irrigated agriculture, maintaining ecological baseflow and ensuring reservoir safety. To address this need, this study develops and evaluates joint-operation schemes for the Jingou River-Hongshan Reservoir irrigation system in Xinjiang, northwestern China, to improve coordination among irrigation water supply, ecological baseflow maintenance and reservoir safety. A monthly reservoir-canal-irrigation operation model is formulated with irrigation demands, ecological flow constraints and key engineering limits. Using this model, operating schemes are generated to explore trade-offs among three objectives: shortages, reliability and non-beneficial reservoir releases. The non-dominated schemes obtained from multi-objective optimization are then ranked using an entropy-weighted TOPSIS framework, from which representative solutions are selected for further interpretation. The results indicate that the top-ranked schemes deliver comparable and relatively well-balanced performance across the objectives. Under the preferred compromise scheme, annual irrigation shortages amount to about 39% of total demand, the mean satisfaction level of irrigation and ecological requirements reaches roughly 57%, and the combined index of spill losses and end-of-year storage deviation remains low. Schemes that push shortage reduction or reliability enhancement to extremes tend to increase spill losses, compromise storage security or both, thereby degrading overall performance. The proposed optimization-ranking framework offers a transparent basis for identifying robust operating strategies that reflect local management priorities and is transferable to other reservoir-supported irrigation systems in arid regions.