As a strategic crop of dry farming in northern China, the photosynthetic characteristics and stress resistance of foxtail millet (Setaria italica L.) are crucial to yield formation. This study aimed to explore the physiological characteristics of various foxtail millet varieties and screen high-efficiency varieties adapted to semi-arid climates. In the agro-pastoral ecotone of northern Shanxi Province, the physiological and ecological parameters, etc. of six cultivars were measured. The results showed that different cultivars had bimodal diurnal photosynthetic curves with distinct peak values and midday depression degrees, reflecting varied responses to high midday temperature and light stress. Dabaigu and Jingu 21 performed superiorly, with mean daily net photosynthetic rates (Pn) of 22.99 and 20.72 mu molm-2s-1, significantly higher than Jinmiao K1 (12.87 mu molm-2s-1). Chlorophyll fluorescence analysis showed Dabaigu had higher potential activity (Fv/F0) of 3.98 than Jinmiao K1 (2.40). Jingu 21 synergistically optimized plant height, stem diameter, and biomass accumulation. Dabaigu and Jingu 21 are elite cultivars for the agro-pastoral ecotone of northern Shanxi Province due to high photosynthetic efficiency, strong photoprotection, and morphological plasticity.