Expectation Propagation for Likelihood-Free Inference

2014
Many models of interest in the natural and social sciences have no closed-form likelihood function, which means that they cannot be treated using the usual techniques of statistical inference. In the case where such models can be efficiently simulated, Bayesian inference is still possible thanks to the approximate Bayesian computation (ABC) algorithm. Although many refinements have been suggested, ABC inference is still far from routine. ABC is often excruciatingly slow due to very low acceptance rates. In addition, ABC requires introducing a vector of summary statistics s(y), the choice of which is relatively arbitrary, and often require some trial and error, making the whole process laborious for the user. We introduce in this work the EP-ABC algorithm, which is an adaptation to the likelihood-free context of the variational approximation algorithm known as expectation propagation. The main advantage of EP-ABC is that it is faster by a few orders of magnitude than standard algorithms, while producing an overall approximation error that is typically negligible. A second advantage of EP-ABC is that it replaces the usual global ABC constraint vertical bar vertical bar s(y) - s(y*)vertical bar vertical bar <= epsilon, where s(r) is the vector of summary statistics computed on the whole dataset, by n local constraints of the form vertical bar vertical bar S-t(y(i)) - s(i)(y(i)*) <= epsilon that apply separately to each data point. In particular, it is often possible to take s(i)(y(i)) = y(i), making it possible to do away with summary statistics entirely. In that case, EP-ABC makes it possible to approximate directly the evidence (marginal likelihood) of the model. Comparisons are performed in three real-world applications that are typical of likelihood-free inference, including one application in neuroscience that is novel, and possibly too challenging for standard ABC techniques.
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION
页码:315-333|卷号:109|期号:505
ISSN:0162-1459
收录类型
SSCI
发表日期
2014
学科领域
循证社会科学-方法
国家
瑞士
语种
英语
DOI
10.1080/01621459.2013.864178
其他关键词
APPROXIMATE BAYESIAN COMPUTATION; CHAIN MONTE-CARLO; MODEL; CHOICE
EISSN
1537-274X
资助机构
BMBFFederal Ministry of Education & Research (BMBF) [Foerderkennzeichen 01GQ1001B]; BigMC ANR grant of the French Ministry of ResearchFrench National Research Agency (ANR) [ANR-008-BLAN-0218]
资助信息
The first author acknowledges support from the BMBF (Foerderkennzeichen 01GQ1001B). The second author acknowledges support from the BigMC ANR grant ANR-008-BLAN-0218 of the French Ministry of Research.
被引频次(WOS)
40
被引更新日期
2022-01
来源机构
University of Geneva Institut Polytechnique de Paris
关键词
Approximate Bayesian computation Approximate inference Composite likelihood Quasi-Monte Carlo